NEURO / DOTTORIO APPS — ASSET ATTRIBUTION

brain.glb: Human Reference Atlas / HuBMAP, Brain Male v1.3; Allen Human
Brain Reference Atlas, Ding et al. (2016), one hemisphere mirrored and
aligned to Visible Human Male. CC BY 4.0. Geometry unchanged; viewer X
reflection aligns anatomical laterality conventions; Italian labels and
teaching colors are presentation adaptations. Source:
https://3d.nih.gov/entries/3DPX-020960?version=1
https://humanatlas.io/3d-reference-library
https://creativecommons.org/licenses/by/4.0/

cord-overview.glb: HRA / HuBMAP, Spinal Cord Male v1.0, Visible Human Male,
Frostell et al. (2016) referenced in original preparation. CC BY 4.0.
Geometry unchanged. Source: https://3d.nih.gov/entries/3DPX-021018?version=1

peripheral.glb: Z-Anatomy, Gauthier Kervyn, Marcin Zielinski and contributors;
based on BodyParts3D, DBCLS, Kousaku Okubo and contributors.
Z-Anatomy adaptations CC BY-SA 4.0.
https://github.com/Z-Anatomy/Models-of-human-anatomy
https://dbarchive.biosciencedbc.jp/en/bodyparts3d/lic.html
Current BodyParts3D archive: CC BY 4.0, updated 2025-02-27; historical upstream
credit CC BY-SA 2.1 Japan is retained here for provenance.
GLB conversion: Liyucheng1997 / 242_lab-human-anatomy, pinned revision
322ba39e96ea91ce08601caad2c0aaade1dc99f0.
https://github.com/Liyucheng1997/242_lab-human-anatomy/tree/322ba39e96ea91ce08601caad2c0aaade1dc99f0/public/models
Additional upstream credits: Brainder/white matter, University of Washington;
cranial nerves and foramina, University of Dundee, CAHID, CC BY 4.0.
Modifications: selective extraction and referenced-buffer repacking; retained
geometry and transforms unchanged; existing atlasId metadata from local
conversion; Italian presentation labels and didactic colors.
This extraction retains 480 components; eye-organ and inner-ear-organ meshes
are excluded. Original inner-ear organ assets credited under CC BY-NC-SA
4.0 and kidney assets under CC BY-NC 4.0 are not shipped in this extraction.
Derived Z-Anatomy mesh material remains CC BY-SA 4.0:
https://creativecommons.org/licenses/by-sa/4.0/

cord.glb: Open3D project / AnatomyTOOL, Eungyeol Lee, LUMC, Alexander Bijnsdorp,
VUMC and collaborators. CC BY-SA 4.0; source geometry and authored textures
unchanged, local atlasId metadata retained. 36 source components.
https://anatomytool.org/content/open3dmodel-spinal-cord-and-surroundings-section-english-labels
Original download: https://caskanatomy.info/open3dviewer/3dmodels/spinal-cord/spinal-cord.glb

Original Neuro procedural educational schematics: Dottorio Apps (2026),
CC BY 4.0 for the exported anatomical schematic GLB material. Illustrative
shapes, no calibrated dimensions, no patient measurements or histological
segmentation. This notice does not relicense independent software code.

Three.js: MIT. Draco decoder: Google, Apache-2.0.
Poppins/Inter fonts: SIL Open Font License; full licenses accompany fonts.
No institutional endorsement or clinical certification is implied.
All source/local hashes are in modeling/coverage-report.json and
modeling/peripheral-report.json. User textbook scans and study images
are not distributed.


morphology.glb: NeuroMorpho.Org (RRID:SCR_002145), NMO_01045,
03a_pyramidal9aFI, archive Allman. Human fronto-insula, layer 5 pyramidal
neuron, Golgi preparation. Source SWC: 816 compartments, soma/dendrites,
No Axon, Dendrites Moderate. Coordinates and radii retained; linear tapered
surface interpolation; sphere at the recorded soma radius. No nucleus,
spines, axon or myelin added to the measured reconstruction. Viewer colors
and procedural surface finish are illustrative presentation adaptations.
CC BY 4.0, https://neuromorpho.org/useterm.jsp
Original research: https://doi.org/10.1016/j.neuroscience.2006.04.084
Tecuatl C, Ljungquist B, Ascoli GA (2024), Accelerating the continuous
community sharing of digital neuromorphology data. FASEB Bioadv. 6(7):207–221.
https://doi.org/10.1096/fba.2024-00048
Metadata and original SWC retained in modeling/morphology/.
https://neuromorpho.org/neuron_info.jsp?neuron_name=03a_pyramidal9aFI

autonomic-reference.glb: 64 selected Z-Anatomy / BodyParts3D surfaces from
peripheral.glb and the pinned skeleton, visceral, cardiovascular and muscular GLBs of
Liyucheng1997 / 242_lab-human-anatomy revision 322ba39e96ea91ce08601caad2c0aaade1dc99f0.
Same attribution and CC BY-SA 4.0 as the Z-Anatomy material above, with
CAHID/Dundee cranial-nerve credits. Original common atlas positions retained;
Draco decoded through Blender, selected surfaces exported without smoothing
or anatomical displacement. Italian labels and tissue colours adapted.
Only oesophagus, stomach, gastric mucosa and urinary bladder from visceral
assets are included; the muscular selection contains the diaphragm. No kidney, inner-ear or eye-organ assets included.
Source and output hashes, selected names and source bounds are recorded in
modeling/autonomic-reference-report.json. This selection does not imply
an individual acquisition or validation of every small nerve branch.


gaze-reference.glb: 70 selected common-coordinate surfaces from Z-Anatomy /
BodyParts3D, converted by Liyucheng1997 / 242_lab-human-anatomy, revision
322ba39e96ea91ce08601caad2c0aaade1dc99f0. Original nervous, muscular and
skeleton assets; source/output SHA-256 hashes and bounds are recorded in
modeling/gaze-reference-report.json. CC BY-SA 4.0, with cranial nerves and
foramina credited to CAHID / University of Dundee (CC BY 4.0), as above.
https://github.com/Z-Anatomy/Models-of-human-anatomy
https://github.com/Liyucheng1997/242_lab-human-anatomy
Includes optic nerve, chiasm, optic tract and posterior commissure,
III/IV/VI and vestibular nuclei, cranial nerves, six extraocular
muscles per side, trochleae, eye tissues, brainstem/frontal and bony context.
No separately NC-licensed inner-ear organ or kidney is included. Blender
selective import/export decodes Draco without moving, smoothing or reflecting
the retained surfaces. Italian labels, gross-tissue colours, procedural finish
and optical presentation are adaptations. Retained nuclei do not segment all
functional subdivisions; source aggregate geometry is not individual anatomy.
Nerve course guides are derived from surface connectivity, with only nearest
export seams below 0.08 mm bridged, and local averaging. Source meshes remain
unchanged. Central connections and terminal muscle branches are original
regional teaching guides, not acquired axons, nerve microanatomy or tractography.
Retinal and scleral guides likewise follow retained surfaces. The scleral
guide indicates the short-ciliary wall course, not segmented nerves.
Pretectal, EWpg and ciliary-ganglion territories and the terminal connection
to the iris are authored regional teaching geometry. Human EWpg is not
identified with the complete retained accessory-nucleus surface.
The vertical-saccade guides additionally use a connectivity-derived proximal
IV course. The original distal IV endpoint is about 4.06 mm from the retained
superior-oblique surface; an explicitly authored regional terminal branch is
used instead in these routes. Original source geometry is retained unchanged.
riMLF, interstitial nucleus of Cajal, central crossings and motor terminal
branches are regional teaching reconstructions, not segmented neuronal groups.
Surface-derived guides remain under the upstream CC BY-SA 4.0 terms.


cerebellar-reference.glb: 47 selected Z-Anatomy / BodyParts3D surfaces from
nervous.glb of the same pinned revision 322ba39e96ea91ce08601caad2c0aaade1dc99f0.
CC BY-SA 4.0, with cranial-nerve credits CAHID / University of Dundee,
CC BY 4.0, as above. Source/output hashes and retained coordinates appear in
modeling/cerebellar-reference-report.json. Cerebellar lobules, flocculi,
nodulus, uvula, tonsils and peduncles of the flocculi retain their source
positions with brainstem, vestibular and ventricular context. No smoothing,
reflection or registration onto HRA is performed. No NC inner-ear asset is
included. Italian labels and procedural gross-tissue finishes are adaptations.
The six cerebellar pathways instead use the separate HRA reference scene.
Their peduncular guides are checked against the retained source surfaces;
regional trajectories are original educational reconstructions, not acquired
axons or individual tractography. The aggregated deep-nucleus mesh does not
separate dentate, interposed and fastigial populations.

Human Purkinje reconstruction
----------------------------
purkinje.glb derives from NeuroMorpho.Org (RRID:SCR_002145), NMO_307495,
Human_PC, D'Angelo archive. Creative Commons Attribution 4.0 International.
Source: https://neuromorpho.org/neuron_info.jsp?neuron_name=Human_PC
Terms: https://neuromorpho.org/useterm.jsp
License: https://creativecommons.org/licenses/by/4.0/
Original study: Masoli S et al. (2024), Human Purkinje cells outperform mouse
Purkinje cells in dendritic complexity and computational capacity.
Communications Biology 7:5. https://doi.org/10.1038/s42003-023-05689-y
Repository citation: Tecuatl C, Ljungquist B, Ascoli GA (2024), Accelerating the
continuous community sharing of digital neuromorphology data. FASEB Bioadv.
6(7):207–221. https://doi.org/10.1096/fba.2024-00048

Changes: 114,756 SWC samples converted to a spherical three-point soma and
capped, overlapping tubes for the three measured dendritic arbors. Source
centre lines, radii, branch identities and endpoints retained; no smoothing or
skeleton decimation. Browser float conversion and compression are audited in
modeling/morphology/purkinje/conversion-report.json. Neutral materials are
illustrative, not acquired tissue colour or microscopic surface texture.
No axon, spines, synapses, nucleus or other ultrastructure is reconstructed.
The spherical soma is the archive approximation, not the original cell-body
contour. The file is a partial reconstruction, not a universal human exemplar.
SWC, original ASC, metadata and source standardization logs are retained in
modeling/morphology/purkinje/. Three 0.005 micrometre proximal radii and the
source's stated moderate dendritic completeness are not silently repaired.

Human cerebellar interneurons
----------------------------
golgi-human.glb and basket-human.glb derive from NeuroMorpho.Org
(RRID:SCR_002145), Jacobs archive, NMO_32563 (189-1-21dw) and NMO_32553
(189-1-2dw). Creative Commons Attribution 4.0 International.
Source: https://neuromorpho.org/neuron_info.jsp?neuron_name=189-1-21dw
Source: https://neuromorpho.org/neuron_info.jsp?neuron_name=189-1-2dw
Terms: https://neuromorpho.org/useterm.jsp
License: https://creativecommons.org/licenses/by/4.0/
Original study: Jacobs B et al. (2014), Comparative neuronal morphology of the
cerebellar cortex in afrotherians, carnivores, cetartiodactyls, and primates.
Front. Neuroanat. 8:24. https://doi.org/10.3389/fnana.2014.00024
Repository citation: Tecuatl C, Ljungquist B, Ascoli GA (2024), Accelerating the
continuous community sharing of digital neuromorphology data. FASEB Bioadv.
6(7):207–221. https://doi.org/10.1096/fba.2024-00048

Changes: 2932 and 2186 SWC samples rendered as archive-approximated somata
and capped overlapping branch tubes. All recorded dendrites and partial axons,
centre lines, radii and branch identities are retained. Neutral materials,
uniform scale 0.004 and translations adapt them to the teaching scene. The
model does not provide an acquired membrane, natural cell colour or texture.
Source SWCs, metadata, hashes and compression comparisons are retained in
modeling/morphology/cerebellar-interneurons/. These source cells have partial
dendrites and incomplete axons. They are not registered with the Purkinje;
afferents, contacts and distal axon continuations in the circuit are authored,
not measured connectivity. No dendrites are fabricated to meet a contact.

Human cerebellar granule cell
----------------------------
granule-human.glb derives from NeuroMorpho.Org (RRID:SCR_002145), Jacobs archive,
NMO_32568, 189-1-30dw. Creative Commons Attribution 4.0 International.
Source: https://neuromorpho.org/neuron_info.jsp?neuron_name=189-1-30dw
Terms: https://neuromorpho.org/useterm.jsp
Credits: Jacobs et al. 2014, Front. Neuroanat. 8:24,
https://doi.org/10.3389/fnana.2014.00024; NeuroMorpho.Org (RRID:SCR_002145);
Tecuatl, Ljungquist and Ascoli 2024, https://doi.org/10.1096/fba.2024-00048.
Changes: all 121 source samples/radii converted to a three-point spherical soma
approximation and capped overlapping neurite tubes. No source arbor omitted,
thickened or bent. Uniform scale and translation into a teaching context.
Partial dendrites and incomplete axon from a 120 micrometre tissue section.
Not an acquired membrane, microscopic texture, measured synapses or connectome.
Mossy/Golgi contacts, afferents and distal axonal continuation are illustrative;
these cells were not acquired together. Conversion and compression checks,
source file and API metadata: modeling/morphology/cerebellar-interneurons/.

Human cerebellar stellate morphology — NMO_32545 (Jacobs / 189-1-12dw)
Source: https://neuromorpho.org/neuron_info.jsp?neuron_name=189-1-12dw
Data: https://neuromorpho.org/dableFiles/jacobs/CNG%20version/189-1-12dw.CNG.swc
License: CC BY 4.0; https://neuromorpho.org/useterm.jsp
Credits: Jacobs et al. 2014, Front. Neuroanat. 8:24, doi:10.3389/fnana.2014.00024;
NeuroMorpho.Org (RRID:SCR_002145); Tecuatl, Ljungquist and Ascoli 2024,
doi:10.1096/fba.2024-00048.
Changes: all 963 SWC samples converted to source-radius tubes and archive soma,
then translated with the same uniform scale as the other cells. No source branches
omitted. Dendrites are partial and axon incomplete, from a 120 micrometre section.
Added surroundings and distal axon continuation are original didactic geometry;
contacts at stellate sample 803 and Purkinje sample 38093 are illustrative, not
acquired synapses or co-registration. Source-edge animation precedes the added
continuation. The human morphology does not imply that mouse physiological
recordings in He et al. 2015 were acquired from this cell.

Microglia — co-acquired surface and intracellular segmentations
-------------------------------------------------------------
microglia.glb derives from EMPIAR-10201, Bolasco G, Weinhard L, Boissonnet T,
Neujahr R, Gross CT (2018), Three-Dimensional Nanostructure of an Intact
Microglia Cell. Front. Neuroanat. 12:105. doi:10.3389/fnana.2018.00105.
Dataset: https://www.ebi.ac.uk/empiar/EMPIAR-10201/
Data DOI: https://doi.org/10.6019/EMPIAR-10201
Data license: CC0, https://www.ebi.ac.uk/empiar/policies/ (checked 2026-10-13).
Source: https://ftp.ebi.ac.uk/empiar/world_availability/10201/data/Segmented.blend
Source SHA256: f569472ec094ca0afbc23556b0f229efb851659362b95a75caca6be117db79f8

Specimen: male Mus musculus P15, hippocampal CA1 stratum radiatum; SBEM,
10 x 10 x 25 nm final image sampling. Not a human cell or a generic adult cell.
Eleven original surface parts are grouped together; thirteen co-acquired
intracellular groups retain the common original mesh coordinate frame.
Only exactly coincident vertices are welded, exact duplicate and zero-area
triangles removed. No smoothing, decimation, hole filling or fabricated
ultrastructure. Legacy display transforms are replaced by one common
right-handed axis conversion, reversed by glTF export. Open acquisition and
segmentation boundaries remain; the result is not a watertight whole cell.
Materials, normals and compartment colours are illustrative, not EM colours.
Draco positions and normals are lossless. All decoded oriented triangles,
positions and normals are checked. Source files and editable Blender project:
assets/neuro/blender/microglia/. Reproducible extraction, native re-open audit,
source metadata and catalog: apps/neuro/modeling/microglia/ and build scripts.


Human neocortical morphology update (2026-10-13)
----------------------------------------------
cortical-interneuron.glb: NeuroMorpho.Org (RRID:SCR_002145), NMO_125933,
161012_08, Stedehouder archive. CC BY 4.0:
https://neuromorpho.org/useterm.jsp
https://neuromorpho.org/neuron_info.jsp?neuron_name=161012_08
https://neuromorpho.org/dableFiles/stedehouder/CNG%20version/161012_08.CNG.swc
Stedehouder J et al. (2019). Local axonal morphology guides the topography
of interneuron myelination in mouse and human neocortex. eLife 8:e48615.
https://doi.org/10.7554/eLife.48615
Tecuatl C, Ljungquist B, Ascoli GA (2024). Accelerating the continuous
community sharing of digital neuromorphology data. FASEB Bioadv. 6:207–221.
https://doi.org/10.1096/fba.2024-00048

The study explicitly identifies 161012.08 as a human layer-3 right-occipital
fast-spiking interneuron. Archive metadata: male, 87 years; dendrites and
axon moderate integrity. No exact Brodmann territory is assigned. The 29
somatic cylinder samples and 19,110 neurite samples are retained. The soma
is an SWC cylinder-chain representation, not a measured membrane surface.
No myelin internodes, boutons, postsynaptic partners or synapses were added.

morphology.glb (NMO_01045, existing attribution above) was regenerated from
the same 816 SWC samples, using continuous branch frames and closed ends.
Its standardized 3-point soma remains an approximated sphere. Dendrites
are partial and no axon was acquired. These two cells were acquired
independently from different regions/layers and are not a measured pair.

Changes: source centre lines/radii unchanged, capped overlapping tubes,
illustrative colors and normals. No coordinate smoothing or decimation.
Lossless Draco positions/normals with all oriented triangles verified.
Optional one-pixel centre lines improve subpixel branch readability;
they indicate paths, not physical diameters or surface texture.
Editable native files and independent reopen checks are under
assets/neuro/blender/neocortical-cells/. Web conversion verification:
apps/neuro/modeling/morphology/neocortical/conversion-report.json.


ASTROCYTE AND VASCULAR CONTEXT — ULTRALISER
Abdellah M., García Cantero J.J., Román Guerrero N., Foni A., Coggan J.S.,
Calì C., Agus M., Zisis E., Keller D., Hadwiger M., Magistretti P.J.,
Markram H., Schürmann F. Ultraliser: a framework for creating multiscale,
high-fidelity and geometrically realistic 3D models for in silico neuroscience.
Briefings in Bioinformatics 24(1), bbac491 (2023).
https://doi.org/10.1093/bib/bbac491
Dataset: https://zenodo.org/records/7105941
License: Creative Commons Attribution 4.0 International
https://creativecommons.org/licenses/by/4.0/

Selected from Supplementary Data 1: published Ultraliser Astrocyte-4 exterior,
original KAUST Mitochondria-Astrocyte-4-1 and -2, BloodVessel-1, Pericyte-2.
Rat, two weeks, somatosensory cortical layer IV; not a human specimen.
Changes: Italian semantic groups, illustrative linear PBR colours and smooth
normals, uniform reversible axis conversion, exact-coordinate welding and
removal of exact duplicate/zero-area triangles where reported, lossless Draco.
Source positions and remaining oriented triangles retained without deformation.
The exterior was already remeshed by the source authors and differs locally
from the raw segmentation; no additional smoothing, decimation or hole filling.
Native files and per-component/source comparison reports are retained locally.

The model is not the complete neurovascular unit. Nucleus, independently
segmented endfeet, validated ER, basement membrane, endothelial junctions,
vascular wall and lumen are not separately provided in this selection.
Colours are didactic, not acquired optical tissue textures. Displayed branch
and organelle morphology does not establish cellular function by itself.


OLIGODENDROCYTE — ULTRALISER (2026-10-13)
Abdellah M., García Cantero J.J., Román Guerrero N., Foni A., Coggan J.S.,
Calì C., Agus M., Zisis E., Keller D., Hadwiger M., Magistretti P.J.,
Markram H., Schürmann F. Ultraliser: a framework for creating multiscale,
high-fidelity and geometrically realistic 3D models for in silico neuroscience.
Briefings in Bioinformatics 24(1), bbac491 (2023).
https://doi.org/10.1093/bib/bbac491
Dataset: https://zenodo.org/records/7105941
License: Creative Commons Attribution 4.0 International
https://creativecommons.org/licenses/by/4.0/

oligodendrocyte.glb derives from Supplementary Data 1, Oligodendrocytes,
published Ultraliser OBJ. Rat, two weeks, somatosensory cortical layer IV;
not a human specimen. Original input Blender and PLY are retained locally.
The published remesh differs from the raw segmentation; a bidirectional
vertex-to-surface comparison is documented. No additional smoothing,
decimation, hole filling or fabricated organelles. Changes: Italian name,
illustrative PBR colour and normals, common reversible axis conversion,
lossless Draco. All retained oriented triangles and positions verified.
Nucleus, axons and individual myelin wraps are not independently segmented.
Appearance is illustrative, not an acquired optical tissue texture.

central-myelin.glb is a separate, original teaching illustration by Dottorio.
Its soma/process union was authored in Blender; it is not a modified or
registered microscopy specimen. Three axons and six visible wrap bands
are illustrative, not measured quantities or universal biological rules.
Adjacent sheaths have no assigned glial identity. Topology, native/web
triangle identity and lossless colours are verified. Editable files:
assets/neuro/blender/oligodendrocyte/; reproducible scripts and provenance:
apps/neuro/modeling/oligodendrocyte/ and related build scripts.


PERIPHERAL MYELINATION — ORIGINAL SCHWANN TEACHING MODEL
schwann.glb is an original illustration by Dottorio. No third-party mesh,
microscopy image or scanned textbook figure is incorporated. Six membrane
turns and eighteen central-cell microvilli are illustrative, not measured.
Colours, dissection window and procedural surface finish are didactic.
The basal lamina is extracellular; neighbouring internodes belong to other
cells. The authored nucleus occupies a Boolean cavity in the cytoplasm.
Native editable file: assets/neuro/blender/schwann/Schwann-SNP.blend.
Scripts and geometry verification: apps/neuro/modeling/schwann/ and the
assemble-schwann.py, verify-schwann.py and compress-schwann.mjs scripts.

Anatomical references, not licenses for imported images or geometry:
Geren B.B. (1954), Experimental Cell Research 7(2):558–562.
https://doi.org/10.1016/S0014-4827(54)80098-X
Meier C. et al. (2004), Journal of Neuroscience 24:3186–3198.
https://doi.org/10.1523/JNEUROSCI.5146-03.2004
Inouye H. et al. (2014), PLOS ONE 9:e100592.
https://doi.org/10.1371/journal.pone.0100592